Network visualization in Cytoscape


The resulting files can be automatically transformed to Cytoscape files (Cytoscape version 2.8). The script is creating new files if it is included in the same directory as the input files. The three resulting files are:
  • NodeScores.noa (containing protein scores)
  • EdgeScores.eda (containing functional interaction scores)
  • ProteinList.txt (containing all proteins from the solution)

Using a network file containing the human interactome (download) and a gene symbols file (download) you can visualize the proteins and perform further analyses.
  • Example 1:
    The perl script has been modified for example 1 (download here) (rightclick -> Save as).
  • Example 2:
    The perl script has been modified for example 2 (download here) (rightclick -> Save as).

The final network sessions can be downloaded here: